Putative Iron-Uptake Abc Transport System Periplasmic Iron-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Iron-Uptake Abc Transport System Periplasmic Iron-Binding Protein
  Conformer 1
(PDB) 		1y4t (A)
  Conformer 2
(PDB) 		3e13 (X)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 159 0.24   102 - 236   294 - 317
2 149 0.16   10 - 101   237 - 293

Sequence


           ______________________________________________________________________________________________101_______________________ 
 1y4t(A) : SELNIYSARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKN 
         :                                                                                                                          
 3e13(X) : SELNIYSARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKN 
           ______________________________________________________________________________________________101_______________________ 

           _____________________________________________________________________________________________________________236________ 
 1y4t(A) : YEDLAKAEFKGEIVMRSATAPYSKTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMT 
         :                                                                                                                          
 3e13(X) : YEDLAKAEFKGEIVMRSATAPYSKTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMT 
           _____________________________________________________________________________________________________________236________ 

           ______________________________________________293____________________________                                            
 1y4t(A) : KSSKNQDAAKKFMEFMLSPEIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR                                            
         :                                                                                                                          
 3e13(X) : KSSKNQDAAKKFMEFMLSPEIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR                                            
           ______________________________________________293____________________________                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		1.8
Translation
(A) 		-0.1
Closure
(%) 		99.2
Bending Residues
( green ) 		  101 - 102
  236 - 237
  293 - 294
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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