Shikimate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Shikimate Dehydrogenase
  Conformer 1
(PDB) 		2hk9 (A)
  Conformer 2
(PDB) 		2hk9 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 143 0.33   3 - 115   139 - 140   236 - 263
2 118 0.54   116 - 138   141 - 235

Sequence


           ______________________________________________________________________________________________________________113_______ 
 2hk9(A) : MINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNTDWIGFLKSLKSLIPE 
         :                                                                                                                          
 2hk9(D) : MINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNTDWIGFLKSLKSLIPE 
           ______________________________________________________________________________________________________________113_______ 

           _______________138______________________________________________________________________________________________235_____ 
 2hk9(A) : VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIYKETKLLKKAKEKGAKLLDGLPMLL 
         :                                                                                                                          
 2hk9(D) : VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIYKETKLLKKAKEKGAKLLDGLPMLL 
           _______________138______________________________________________________________________________________________235_____ 

           _____________________________                                                                                            
 2hk9(A) : WQGIEAFKIWNGCEVPYSVAERSVRDLRG                                                                                            
         :                                                                                                                          
 2hk9(D) : WQGIEAFKIWNGCEVPYSVAERSVRD***                                                                                            
           _____________________________                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.9
Translation
(A) 		-0.2
Closure
(%) 		63.0
Bending Residues
( green ) 		  113 - 118
  138 - 141
  235 - 236
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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