Signal Recognition Particle Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Signal Recognition Particle Protein
  Conformer 1
(PDB) 		2cnw (A)
  Conformer 2
(PDB) 		1ng1 (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 207 1.96   39 - 54   89 - 279
2 71 1.57   10 - 38   55 - 88   280 - 287

Sequence


           ____________________________________38______________54_____________________________85___________________________________ 
 2cnw(A) : ***QLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 
         :                                                                                                                          
 1ng1(A) : MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 
           ____________________________________38______________54_____________________________85___________________________________ 

           ________________________________________________________________________________________________________________________ 
 2cnw(A) : YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVT 
         :                                                                                                                          
 1ng1(A) : YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVT 
           ________________________________________________________________________________________________________________________ 

           ____________________________________279_______________                                                                   
 2cnw(A) : GLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG*                                                                   
         :                                                                                                                          
 1ng1(A) : GLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGM                                                                   
           ____________________________________279_______________                                                                   

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.4
Translation
(A) 		-1.0
Closure
(%) 		90.3
Bending Residues
( green ) 		  38 - 51
  54 - 55
  85 - 92
  279 - 287
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download