Tata-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tata-Binding Protein
  Conformer 1
(PDB) 		1tbp (B)
  Conformer 2
(PDB) 		1ytb (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 92 0.69   64 - 67   72 - 159
2 82 0.52   68 - 71   160 - 237

Sequence


           _____67_70______________________________________________________________________________________159_____________________ 
 1tbp(B) : MGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 
         :                                                                                                                          
 1ytb(B) : SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 
           _____67_70______________________________________________________________________________________159_____________________ 

           ____________________________________________________________                                                             
 1tbp(B) : TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM                                                             
         :                                                                                                                          
 1ytb(B) : TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM                                                             
           ____________________________________________________________                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.6
Translation
(A) 		0.7
Closure
(%) 		98.1
Bending Residues
( green ) 		  67 - 68
  70 - 72
  159 - 160
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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