Transcription Antitermination Protein Nusg

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcription Antitermination Protein Nusg
  Conformer 1
(PDB) 		1m1g (A)
  Conformer 2
(PDB) 		1m1g (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 88 0.85   49 - 132   185 - 188
2 90 0.88   11 - 48   133 - 184
3 54 1.25   193 - 246

Sequence


           ________________________________________48______________________________________________________________________________ 
 1m1g(A) : **LEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVESVEGDTCVNAPPISKPGQKITCKENKTEA 
         :                                                                                                                          
 1m1g(B) : QELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVESVEGDTCVNAPPISKPGQKITCKENKTEA 
           ________________________________________48______________________________________________________________________________ 

           ___132_______________________________________174________185_____________________________________________________________ 
 1m1g(A) : KIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVE 
         :                                                                                                                          
 1m1g(B) : KIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVE 
           ___132_______________________________________174________185_____________________________________________________________ 

           __                                                                                                                       
 1m1g(A) : KI                                                                                                                       
         :                                                                                                                          
 1m1g(B) : KI                                                                                                                       
           __                                                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.1
Translation
(A) 		-0.2
Closure
(%) 		98.5
Bending Residues
( green ) 		  48 - 50
  132 - 133
  174 - 188
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		103.8
Translation
(A) 		0.8
Closure
(%) 		9.0
Bending Residues
( green ) 		  185 - 195
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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