Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uridylate Kinase
  Conformer 1
(PDB) 		2bnf (A)
  Conformer 2
(PDB) 		2bnf (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 191 0.54   9 - 162   189 - 237
2 25 0.53   163 - 188

Sequence


           ________________________________________________________________________________________________________________________ 
 2bnf(A) : *AKPVYKRILLKLSGEALQGTEGFGIDASILDRaQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGnRVVGDHglATVnGLArDALHRAYVNARLsAIPLNvCDSYSWAEAISLLRNNRV 
         :                                                                                                                          
 2bnf(B) : NAKPVYKRILLKLSGEALQGTE-fGIDASILDRaQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGnRVVGDHglATVnGLArDALHRAYVNARLsAIPLNvCDSYSWAEAISLLRNNRV 
           ________________________________________________________________________________________________________________________ 

           ____________________________162_____________________187___________________________________________________               
 2bnf(A) : VILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATyEQLTYSEVLEKELKVdLAAFTLARDHKLPIRVFNnKPGALRRVVgEKEGTLITE               
         :                                                                                                                          
 2bnf(B) : VILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATyEQLTYSEVLEKELKVdLAAFTLARDHKLPIRVFNnKPGALRRVVgEKEGTLITE               
           ____________________________162_____________________187___________________________________________________               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.2
Translation
(A) 		-0.2
Closure
(%) 		96.7
Bending Residues
( green ) 		  162 - 163
  187 - 192
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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