DynDom - Protein Domain Motions

Wd Repeat-Containing Protein 48

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Wd Repeat-Containing Protein 48
Conformer 1 (PDB)	5k1a (B)
Conformer 2 (PDB)	5k1a (H)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	386	0.38	17 - 367 371 - 382 392 - 410 416 - 419 421 - 430 442 - 449
2	199	0.59	16 - 16 368 - 370 383 - 391 411 - 415 420 - 420 431 - 441 450 - 671

Sequence

`__16____________________________________________________________________________________________________________________` `5k1a(B) : KVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELV` `:` `5k1a(H) : RKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELV` `__16____________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `5k1a(B) : ASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHD` `:` `5k1a(H) : ASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHD` `________________________________________________________________________________________________________________________` `______________________________________________________________________________________________367____________382______39` `5k1a(B) : EGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGtPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVL` `:` `5k1a(H) : EGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGtPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVL` `______________________________________________________________________________________________367____________382______39` `1_______________409___415_419____426____________441_____________________________________________________________________` `5k1a(B) : KACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSP----pKLNLGGLLLQALLEYWPRTHVNPMvQKGNGYFQVPPHTPVIFGEAGGRTLFR` `:` `5k1a(H) : KACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHVNPMvQKGNGYFQVPPHTPVIFGEAGGRTLFR` `1_______________409___415_419____426____________441_____________________________________________________________________` `________________________________________________________________________________________________________________________` `5k1a(B) : LLCRDSGGETESMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHAkKDRLSASDMLQVRKVMEHVYEKIINLeDIAVLAEEKIELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYRQK` `:` `5k1a(H) : LLCRDSGGETESMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHAkKDRLSASDMLQVRKVMEHVYEKI----dIAVLAEEKIELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR*` `________________________________________________________________________________________________________________________`

Morph

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Status: Initialising

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	4.8
Translation (A)	0.1
Closure (%)	66.0
Bending Residues ( green )	16 - 17 367 - 368 370 - 373 382 - 383 391 - 392 409 - 411 415 - 416 419 - 422 426 - 431 441 - 458
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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