Yeast Initiation Factor 4A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Yeast Initiation Factor 4A
  Conformer 1
(PDB) 		1fuu (B)
  Conformer 2
(PDB) 		2zu6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 170 2.53   46 - 223
2 151 2.39   224 - 386

Sequence


           ________________________________________________________________________________________________________________________ 
 1fuu(B) : QIQTNYDKVVYKFDDeLDENLLRGVFGYGFEEPSAIQQRAIpIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQAL-lAPTRELALQIQKVV-aLA-FHdIKVHACIGGTSFVED 
         :                                                                                                                          
 2zu6(A) : ***************************MEGVIESNWNEaILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________222____________________________ 
 1fuu(B) : AEGLR-DA-QIVVGTPGRVFDNIQRRRFRTDKIK-fILDEADE-lSSGFKEQIYQIFTLLPPTTQVVLLSAT-pNDVLEVTTKF-rNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECL 
         :                                                                                                                          
 2zu6(A) : VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTL 
           _________________________________________________________________________________________235____________________________ 

           ________________________________________________________________________________________________________________________ 
 1fuu(B) : TDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIkEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGG---kGVAINFVTNEDVGA-r 
         :                                                                                                                          
 2zu6(A) : CDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHrDV------IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGkGVAINMVTEEDKRTLR 
           ________________________________________________________________________________________________________________________ 

           ______________________                                                                                                   
 1fuu(B) : ELEKFYSTQIEELPSDIATLLN                                                                                                   
         :                                                                                                                          
 2zu6(A) : DIETFYNTSIEEMPLN******                                                                                                   
           ______________________                                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		79.7
Translation
(A) 		-2.3
Closure
(%) 		87.4
Bending Residues
( green ) 		  222 - 228
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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