Zinc Peptidase Active Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Zinc Peptidase Active Subunit
  Conformer 1
(PDB) 		3amj (A)
  Conformer 2
(PDB) 		3amj (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 272 0.74   32 - 255   260 - 261   279 - 289   329 - 329   331 - 335   381 - 384   388 - 412
2 144 0.52   256 - 259   262 - 278   290 - 328   330 - 330   336 - 380   385 - 387   413 - 447

Sequence


           ________________________________________________________________________________________________________________________ 
 3amj(A) : PAASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFK 
         :                                                                                                                          
 3amj(C) : PAASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________255_259_________ 
 3amj(A) : KEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPA 
         :                                                                                                                          
 3amj(C) : KEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPA 
           ________________________________________________________________________________________________________255_259_________ 

           _______278________289____________________________________328____335__________________________________________380_384____ 
 3amj(A) : ELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYE 
         :                                                                                                                          
 3amj(C) : ELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYE 
           _______278________289____________________________________328____335__________________________________________380_384____ 

           _____________________412______________________________________                                                           
 3amj(A) : QDSLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLTDDTLTVANLVPLPP                                                           
         :                                                                                                                          
 3amj(C) : QDSLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLTDDTLTVANLVPLPP                                                           
           _____________________412______________________________________                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.0
Translation
(A) 		-0.3
Closure
(%) 		98.4
Bending Residues
( green ) 		  255 - 256
  259 - 262
  278 - 279
  289 - 290
  328 - 331
  335 - 336
  380 - 381
  384 - 388
  412 - 413
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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