Tropomyosin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tropomyosin
  Conformer 1
(PDB) 		1c1g (B)
  Conformer 2
(PDB) 		1c1g (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 80 1.17   422 - 500   504 - 504
2 32 0.74   347 - 378
3 32 0.64   501 - 503   505 - 533
4 31 0.76   316 - 346
5 31 0.82   534 - 564

Sequence


           __________________________________________________________345______________________________378__________________________ 
 1c1g(B) : MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 
         :                                                                                                                          
 1c1g(C) : MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 
           __________________________________________________________629______________________________662__________________________ 

           _____________________________________________________________________________________________500________________________ 
 1c1g(B) : DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 
         :                                                                                                                          
 1c1g(C) : DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 
           _____________________________________________________________________________________________784________________________ 

           ______533___________________________________                                                                             
 1c1g(B) : FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI                                                                             
         :                                                                                                                          
 1c1g(C) : FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI                                                                             
           ______817___________________________________                                                                             

Morph
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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 22.4 10.7 100.0   378 - 425 Bending Region Analysis
1 3 22.8 1.9 99.9   500 - 508 Bending Region Analysis
4 2 17.4 -1.5 98.7   345 - 347 Bending Region Analysis
5 3 10.4 -1.1 81.0   533 - 534 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 4 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 4

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 5 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 5

Movement classification: Hinge

PyMOL Script

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