Glucose Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucose Dehydrogenase
  Conformer 1
(PDB) 		1gco (A)
  Conformer 2
(PDB) 		3ay6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 237 0.5   3 - 191   212 - 259
2 20 0.33   192 - 211

Sequence


           ________________________________________________________________________________________________________________________ 
 1gco(A) : **MYKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLT 
         :                                                                                                                          
 3ay6(A) : HHMYTDLKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLT 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________191_________________211___________________________ 
 1gco(A) : GAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASY 
         :                                                                                                                          
 3ay6(A) : GAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVESMIPMGYIGKPEEVAAVAAFLASSQASY 
           ______________________________________________________________________191_________________211___________________________ 

           _______________________                                                                                                  
 1gco(A) : VTGITLFADGGMTQYPSFQAGRG                                                                                                  
         :                                                                                                                          
 3ay6(A) : VTGITLFADGGMTKYPSFQFGRG                                                                                                  
           _______________________                                                                                                  

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.7
Translation
(A) 		-0.2
Closure
(%) 		31.6
Bending Residues
( green ) 		  191 - 192
  211 - 212
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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