Prostaglandin Reductase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Prostaglandin Reductase 2
  Conformer 1
(PDB) 		2zb3 (A)
  Conformer 2
(PDB) 		1vj1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 178 0.97   118 - 125   130 - 314
2 142 0.8   5 - 117   126 - 129   315 - 344

Sequence


           ___________________________________________________________________________________________________________________117__ 
 2zb3(A) : **IIQRVVLNSRPGKNGNTVAENFRVEEFSLPDALNEGQVQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDP 
         :                                                                                                                          
 1vj1(A) : HHiIQRVVLNSRPGKNGNPVAENFRVEEFSLLDALNEGQVQVRTLYLSVDPY-rCK-nEDTGTDYLAPWQLAQVADGGGIGIVEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDP 
           ___________________________________________________________________________________________________________________117__ 

           ___125_129______________________________________________________________________________________________________________ 
 2zb3(A) : QLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNA 
         :                                                                                                                          
 1vj1(A) : QLVDGHLSYFLGAIG-pGLTSLIGVQEKGHISAGSNQT-vVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNT 
           ___125_129______________________________________________________________________________________________________________ 

           ________________________________________________________________________314_____________________________________         
 2zb3(A) : VISQMNENSHIILCGQISQYSNDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEGKLKVKETMAKGLENMGVAFQSMMTGGNVGKQIVCIS*****         
         :                                                                                                                          
 1vj1(A) : VISQ-nENSHIILC------------pPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEGKLKVKETVAKGLEN-gVAFQS--tGGNVGKQIVCISEDSSL         
           ________________________________________________________________________314_____________________________________         

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.1
Translation
(A) 		0.4
Closure
(%) 		21.8
Bending Residues
( green ) 		  117 - 118
  125 - 126
  129 - 130
  314 - 315
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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