Angiostatin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Angiostatin
  Conformer 1
(PDB)
1ki0 (A)
  Conformer 2
(PDB)
2doh (X)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 81 0.73   163 - 243
2 80 0.31   83 - 162

Sequence


           ____________________________________________________________________________159_________________________________________ 
 1ki0(A) : LSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHRPRFSPATHPSEGLEENYCRNPDNDPQGPWCYTTDPEKRYDYCDILECEEECMHCSGENYDGKISKTMSGLECQAWDSQSPHAHGY 
         :                                                                                                                          
 2doh(X) : LSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHRPRFSPATHPSEGLEENYCRNPDNDPQGPWCYTTDPEKRYDYCDILECEEECMHCSGENYDGKISKTMSGLECQAWDSQSPHAHGY 
           ____________________________________________________________________________159_________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ki0(A) : IPSKFPNKNLKKNYCRNPDRELRPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTHERTPENFPCKNLDENYCRNPDGKRAPWCHTTN 
         :                                                                                                                          
 2doh(X) : IPSKFPNKNLKKNYCRNPDRELRPWCFTTDPNKRWELCDIPRCTT*************************************************************************** 
           ________________________________________________________________________________________________________________________ 

           _____________                                                                                                            
 1ki0(A) : SQVRWEYCKIPSC                                                                                                            
         :                                                                                                                          
 2doh(X) : *************                                                                                                            
           _____________                                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
48.1
Translation
(A)
0.5
Closure
(%)
7.5
Bending Residues
( green )
  159 - 165
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download