Arginine Repressor/activator Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Arginine Repressor/activator Protein
  Conformer 1
(PDB)
1f9n (C)
  Conformer 2
(PDB)
1f9n (F)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 69 0.35   76 - 144
2 42 0.56   7 - 48

Sequence


           ____________________________________________46__________________________________________________________________________ 
 1f9n(C) : *NKGQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMG 
         :                                                                                                                          
 1f9n(F) : MNKGQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMG 
           ____________________________________________46__________________________________________________________________________ 

           _____________________________                                                                                            
 1f9n(C) : TICGDDTILIICRTPEDTEGVKNRLLELL                                                                                            
         :                                                                                                                          
 1f9n(F) : TICGDDTILIICRTPEDTEGVKNRLLELL                                                                                            
           _____________________________                                                                                            

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.3
Translation
(A)
0.0
Closure
(%)
49.1
Bending Residues
( green )
  46 - 77
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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