Aspartate-Semialdehyde Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate-Semialdehyde Dehydrogenase
  Conformer 1
(PDB)
1gl3 (B)
  Conformer 2
(PDB)
1t4b (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 257 0.66   19 - 26   98 - 102   112 - 116   121 - 351   353 - 360
2 106 1.07   3 - 18   27 - 97   103 - 111   117 - 120   352 - 352   361 - 365

Sequence


           ________________18______26_____________________________________________________________________97__102______111__116_120 
 1gl3(B) : MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT 
         :                                                                                                                          
 1t4b(A) : MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT 
           ________________18______26_____________________________________________________________________97__102______111__116_120 

           ________________________________________________________________________________________________________________________ 
 1gl3(B) : DGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSR 
         :                                                                                                                          
 1t4b(A) : DGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSR 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________348_________360 
 1gl3(B) : EEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLR 
         :                                                                                                                          
 1t4b(A) : EEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLR 
           _________________________________________________________________________________________________________348_________360 

           _______                                                                                                                  
 1gl3(B) : RMLRQLA                                                                                                                  
         :                                                                                                                          
 1t4b(A) : RMLRQLA                                                                                                                  
           _______                                                                                                                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.9
Translation
(A)
-0.1
Closure
(%)
96.3
Bending Residues
( green )
  18 - 19
  26 - 27
  97 - 98
  102 - 103
  111 - 112
  116 - 117
  120 - 121
  348 - 353
  360 - 361
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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