Cr2/cd121/c3d/epstein-Barr Virus Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cr2/cd121/c3d/epstein-Barr Virus Receptor
  Conformer 1
(PDB)
1ghq (C)
  Conformer 2
(PDB)
1ly2 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 64 0.74   3 - 66
2 62 0.61   67 - 128

Sequence


           _______________________________________________________________65_______________________________________________________ 
 1ghq(C) : AISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWG 
         :                                                                                                                          
 1ly2(A) : EASCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWG 
           _______________________________________________________________64_______________________________________________________ 

           ______________                                                                                                           
 1ghq(C) : PTRLPTCVSVFPLE                                                                                                           
         :                                                                                                                          
 1ly2(A) : PTRLPTCVSI****                                                                                                           
           ______________                                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.4
Translation
(A)
-0.2
Closure
(%)
6.7
Bending Residues
( green )
  65 - 71
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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