DNA Replication Initiator (Cdc21/cdc54)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Replication Initiator (Cdc21/cdc54)
  Conformer 1
(PDB)
1ltl (C)
  Conformer 2
(PDB)
1ltl (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 161 0.61   6 - 111   114 - 116   184 - 202   206 - 238
2 72 0.48   112 - 113   117 - 183   203 - 205

Sequence


           _________________________________________________________________________________________________________111__116_______ 
 1ltl(C) : VDKSKTLTKFEEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRKNVDLNIRFSGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRP 
         :                                                                                                                          
 1ltl(F) : VDKSKTLTKFEEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRKNVDLNIRFSGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRP 
           _________________________________________________________________________________________________________111__116_______ 

           _____________________________________________________179____________________202________________________________________  
 1ltl(C) : RIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDERTKRFKNFIYGNYTEFL  
         :                                                                                                                          
 1ltl(F) : RIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDERTKRFKNFIYGNYTEFL  
           _____________________________________________________179____________________202________________________________________  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.6
Translation
(A)
0.1
Closure
(%)
76.6
Bending Residues
( green )
  111 - 114
  116 - 123
  179 - 184
  202 - 206
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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