Tick-Borne Encephalitis Virus Glycoprotein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tick-Borne Encephalitis Virus Glycoprotein
  Conformer 1
(PDB) 		1urz (B)
  Conformer 2
(PDB) 		1urz (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 313 0.45   5 - 65   119 - 240   257 - 399
2 69 0.48   66 - 118   241 - 256

Sequence


           ______________________________________________________________65_________________________________________________117____ 
 1urz(B) : RCTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENPAKTREYCLHAKLSDTKVAARCPTMGPATLAEEHQGGTVCKRDQSDRGWGNHCGLFGKGSIVACVKAAC 
         :                                                                                                                          
 1urz(F) : RCTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENPAKTREYCLHAKLSDTKVAARCPTMGPATLAEEHQGGTVCKRDQSDRGWGNHCGLFGKGSIVACVKAAC 
           ______________________________________________________________65_________________________________________________117____ 

           ________________________________________________________________________________________________________240________251__ 
 1urz(B) : EAKKKATGHVYDANKIVYTVKVEPHTrKTASFTISSEKTILTMGEYGDVSLLCRVASGVDLAQTVILELDKTVEH-pTAWQVHRDWFNDLALPWKHEGAQNWNNAERLVEFGAPHAVKMD 
         :                                                                                                                          
 1urz(F) : EAKKKATGHVYDANKIVYTVKVEPHTrKTASFTISSEKTILTMGEYGDVSLLCRVASGVDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWNNAERLVEFGAPHAVKMD 
           ________________________________________________________________________________________________________240________251__ 

           ________________________________________________________________________________________________________________________ 
 1urz(B) : VYNLGDQTGVLLKALAGVPVAHIEGTKYHLKSGHVTCEVGLEKLKMKGLTYTMCDKTKFTWKRAPTDSGHDTVVMEVTFSGTKPCRIPVRAVAHGSPDVNVAMLITPNPTIENNGGGFIE 
         :                                                                                                                          
 1urz(F) : VYNLGDQTGVLLKALAGVPVAHIEGTKYHLKSGHVTCEVGLEKLKMKGLTYTMCDKTKFTWKRAPTDSGHDTVVMEVTFSGTKPCRIPVRAVAHGSPDVNVAMLITPNPTIENNGGGFIE 
           ________________________________________________________________________________________________________________________ 

           ____________________________                                                                                             
 1urz(B) : MQLPPGDNIIYVGELSHQWFQKGSSIGR                                                                                             
         :                                                                                                                          
 1urz(F) : MQLPPGDNIIYVGELSHQWFQKGSSIGR                                                                                             
           ____________________________                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.4
Translation
(A) 		0.4
Closure
(%) 		39.4
Bending Residues
( green ) 		  65 - 69
  117 - 120
  240 - 244
  251 - 258
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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