Gluconate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gluconate Kinase
  Conformer 1
(PDB)
1ko5 (B)
  Conformer 2
(PDB)
1knq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 132 0.77   5 - 36   72 - 171
2 35 0.51   37 - 71

Sequence


           ________________________________36_________________________________71___________________________________________________ 
 1ko5(B) : TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 
         :                                                                                                                          
 1knq(A) : TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 
           ________________________________36_________________________________71___________________________________________________ 

           ____________________________________________________                                                                     
 1ko5(B) : ARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKKG                                                                     
         :                                                                                                                          
 1knq(A) : ARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK*                                                                     
           ____________________________________________________                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.7
Translation
(A)
0.3
Closure
(%)
79.8
Bending Residues
( green )
  36 - 37
  71 - 72
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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