Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 2
  Conformer 1
(PDB)
1yae (B)
  Conformer 2
(PDB)
2i0c (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 142 0.54   433 - 533   535 - 535   761 - 800
2 107 1.1   534 - 534   536 - 760   801 - 802

Sequence


           ____________________________________________________________________________________________________________533_________ 
 1yae(B) : NITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILY 
         :                                                                                                                          
 2i0c(A) : *******NRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITCVREKVIDFSKPFMTLGISILY 
           ____________________________________________________________________________________________________________106_________ 

           _______________________________________________________________________________________________760______________________ 
 1yae(B) : RKPN-iDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAI 
         :                                                                                                                          
 2i0c(A) : RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAI 
           _______________________________________________________________________________________________213______________________ 

           ______________799_______                                                                                                 
 1yae(B) : LQLQEEGKLHMMKEKWWRGNGC**                                                                                                 
         :                                                                                                                          
 2i0c(A) : CQLQEEGKLHMMKEKWWRGNGCPS                                                                                                 
           ______________252_______                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.7
Translation
(A)
0.3
Closure
(%)
74.0
Bending Residues
( green )
  533 - 536
  760 - 762
  799 - 802
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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