Seventeen Kilodalton Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Seventeen Kilodalton Protein
  Conformer 1
(PDB)
1u2m (C)
  Conformer 2
(PDB)
1sg2 (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 70 0.47   44 - 117
2 59 0.31   25 - 43   118 - 158

Sequence


           ___________________40________________________________________________________________________115________________________ 
 1u2m(C) : GaDKIAIVN-gSLFQQVAQKTGVSNTLENEFKGRASELQR-eTDLQAK-kKLQS-kAGSDRTKLEKDV-aQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDA 
         :                                                                                                                          
 1sg2(C) : AADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDA 
           ___________________32________________________________________________________________________107________________________ 

           ______________________                                                                                                   
 1u2m(C) : NAVAYNSSDVKDITADVLKQVK                                                                                                   
         :                                                                                                                          
 1sg2(C) : NAVAYNSSDVKDITADVLKQVK                                                                                                   
           ______________________                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.3
Translation
(A)
-0.1
Closure
(%)
85.7
Bending Residues
( green )
  40 - 45
  115 - 119
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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