Interferon-Gamma

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Interferon-Gamma
  Conformer 1
(PDB)
1d9c (A)
  Conformer 2
(PDB)
1d9g (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 60 0.66   32 - 52   81 - 119
2 57 0.71   3 - 31   53 - 80

Sequence


           _____________________________31___________________52__________________________80________________________________________ 
 1d9c(A) : QGQFFREIENLKEYFNASSPDVAKGGPLFSEILKNWKDESDKKIIQSQIVSFYFKLFENLKDNQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKVMNDL 
         :                                                                                                                          
 1d9g(A) : QGQFFREIENLKEYFNASSPDVAKGGPLFSEILKNWKDESDKKIIQSQIVSFYFKLFENLKDNQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKVMNDL 
           _____________________________31___________________52__________________________80________________________________________ 

           _                                                                                                                        
 1d9c(A) : S                                                                                                                        
         :                                                                                                                          
 1d9g(A) : S                                                                                                                        
           _                                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.3
Translation
(A)
0.3
Closure
(%)
3.0
Bending Residues
( green )
  31 - 33
  52 - 53
  80 - 84
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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