Iron(III) Dicitrate Transport Protein Feca

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Iron(III) Dicitrate Transport Protein Feca
  Conformer 1
(PDB)
1kmp (A)
  Conformer 2
(PDB)
1kmo (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 604 0.83   99 - 521   529 - 563   567 - 567   579 - 737
2 21 4.25   522 - 528   564 - 566   568 - 578

Sequence


           ________________________________________________________________________________________________________________________ 
 1kmp(A) : **************NDVFEHAGARDVIRREDFAKTGATT-rEVLNRIPGVSAPENNGTGSHDLA-nFGIRGLNPRLASRSTVL-dGIPVPFAPYGQPQLSLAPVSLGN-dAIDVVRGGGA 
         :                                                                                                                          
 1kmo(A) : ALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kmp(A) : VRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPKETHNL-vGGTADNGFGTALLYSGTRGSDWREHSATRIDDL-lKSKYAPDEVHTFNSLLQYYDGEAD-pGGLSRADYD 
         :                                                                                                                          
 1kmo(A) : VRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPKETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kmp(A) : ADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRGIEPRYSQIF-iGPSAHEVGVGYRYLNESTHE-rYYTATSSGQLPSGSSPYDRDT 
         :                                                                                                                          
 1kmo(A) : ADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDT 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________521____528_____________________________560 
 1kmp(A) : RSGTEAHAWYLDDKIDIGNWTITPG-rFEHIESYQNNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGTRYDDGALTAE-gLFLI 
         :                                                                                                                          
 1kmo(A) : RSGTEAHAWYLDDKIDIGNWTITPGMRFEHIESYQNNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGTRYDDGALTAEMGLFLI 
           ______________________________________________________________________________521____528_____________________________560 

           ___566________577_______________________________________________________________________________________________________ 
 1kmp(A) : NFNNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYKPGNWTFNLNSDFQSSQFADNANTVKESADGSTGRIPG 
         :                                                                                                                          
 1kmo(A) : NFNNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYKPGNWTFNLNSDFQSSQFADNANTVKESADGSTGRIPG 
           ___566________577_______________________________________________________________________________________________________ 

           _____________________________________________________________                                                            
 1kmp(A) : F-lWGARVAYDFGPQ-aDLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLY-qGSLKF                                                            
         :                                                                                                                          
 1kmo(A) : FMLWGARVAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF                                                            
           _____________________________________________________________                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
50.5
Translation
(A)
-0.4
Closure
(%)
18.1
Bending Residues
( green )
  521 - 522
  528 - 537
  560 - 564
  566 - 568
  577 - 583
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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