T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name T4 Lysozyme
  Conformer 1
(PDB) 		172l  
  Conformer 2
(PDB) 		214l  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 92 2.33   3 - 11   78 - 160
2 66 0.66   12 - 77

Sequence


           _________11_____________________________________________________________74______________________________________________ 
 172l    : MNCFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLR- 
         :                                                                                                                          
 214l    : MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRA 
           _________11_____________________________________________________________74______________________________________________ 

           _____________________________________________                                                                            
 172l    : MLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL                                                                            
         :                                                                                                                          
 214l    : MLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYK**                                                                            
           _____________________________________________                                                                            

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		41.0
Translation
(A) 		-2.0
Closure
(%) 		93.2
Bending Residues
( green ) 		  11 - 12
  74 - 78
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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