Methylmalonyl-Coa Mutase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Methylmalonyl-Coa Mutase
  Conformer 1
(PDB)
1req (C)
  Conformer 2
(PDB)
2req (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 505 1.75   6 - 90   201 - 206   240 - 486   560 - 726
2 216 1.14   91 - 200   207 - 239   487 - 559

Sequence


           _______________________________________________________________________________________90_______________________________ 
 1req(C) : STLPRFDSVDLGNAPVPADAARRFEELAAKAGTGEAWETAEQIPVGTLFNEDVYKDMDWLDTYAGIPPFVHGPYATMYAFRPWTIRQYAGFSTAKESNAFYRRNLAAGQKGLSVAFDLPT 
         :                                                                                                                          
 2req(C) : **LPRFDSVDLGNAPVPADAARRFEELAAKAGTGEAWETAEQIPVGTLFNEDVYKDMDWLDTYAGIPPFVHGPYATMYAFRPWTIRQYAGFSTAKESNAFYRRNLAAGQKGLSVAFDLPT 
           _______________________________________________________________________________________90_______________________________ 

           ____________________________________________________________________________200___206__________________________235______ 
 1req(C) : HRGYDSDNPRVAGDVGMAGVAIDSIYDMRELFAGIPLDQMSVSMTMNGAVLPILALYVVTAEEQGVKPEQLAGTIQNDILKEFMVRNTYIYPPQPSMRIISEIFAYTSANMPKWNSISIS 
         :                                                                                                                          
 2req(C) : HRGYDSDNPRVAGDVGMAGVAIDSIYDMRELFAGIPLDQMSVSMTMNGAVLPILALYVVTAEEQGVKPEQLAGTIQNDILKEFMVRNTYIYPPQPSMRIISEIFAYTSANMPKWNSISIS 
           ____________________________________________________________________________200___206__________________________235______ 

           ________________________________________________________________________________________________________________________ 
 1req(C) : GYHMQEAGATADIEMAYTLADGVDYIRAGESVGLNVDQFAPRLSFFWGIGMNFFMEVAKLRAARMLWAKLVHQFGPKNPKSMSLRTHSQTSGWSLTAQDVYNNVVRTCIEAMAATQGHTQ 
         :                                                                                                                          
 2req(C) : GYHMQEAGATADIEMAYTLADGVDYIRAGESVGLNVDQFAPRLSFFWGIGMNFFMEVAKLRAARMLWAKLVHQFGPKNPKSMSLRTHSQTSGWSLTAQDVYNNVVRTCIEAMAATQGHTQ 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________471__________ 
 1req(C) : SLHTNSLDEAIALPTDFSARIARNTQLFLQQESGTTRVIDPWSGSAYVEELTWDLARKAWGHIQEVEKVGGMAKAIEKGIPKMRIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVL 
         :                                                                                                                          
 2req(C) : SLHTNSLDEAIALPTDFSARIARNTQLFLQQESGTTRVIDPWSGSAYVEELTWDLARKAWGHIQEVEKVGGMAKAIEKGIPKMRIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVL 
           ___________________________________________________________________________________________________________471__________ 

           ___________________________________________________________________________559__________________________________________ 
 1req(C) : KVDNSTVLAEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATVGEMSDALEKVFGRYTAQIRTISGVYSKEVKNTPEVEEARELVEEFEQAEGRRPRIL 
         :                                                                                                                          
 2req(C) : KVDNSTVLAEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATVGEMSDALEKVFGRYTAQIRTISGVYSKEVKNTPEVEEARELVEEFEQAEGRRPRIL 
           ___________________________________________________________________________559__________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1req(C) : LAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKK 
         :                                                                                                                          
 2req(C) : LAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKK 
           ________________________________________________________________________________________________________________________ 

           _______                                                                                                                  
 1req(C) : LRASLDA                                                                                                                  
         :                                                                                                                          
 2req(C) : LRASLDA                                                                                                                  
           _______                                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.1
Translation
(A)
0.2
Closure
(%)
96.0
Bending Residues
( green )
  90 - 91
  200 - 201
  206 - 207
  235 - 240
  471 - 488
  559 - 560
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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