Mitochondrial Rna-Binding Protein 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mitochondrial Rna-Binding Protein 1
  Conformer 1
(PDB)
2gid (K)
  Conformer 2
(PDB)
2gia (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 115 0.77   30 - 37   47 - 61   78 - 171
2 24 1.32   38 - 45   62 - 77

Sequence


           ________37_____44_______________61______________77______________________________________________________________________ 
 2gid(K) : SLPKFEIHDVRDDPAEGT-tRVAVDGKLLLISQYPQLGPRKVDPNDLSPQFDADRRISVRLRHVDLAYLVGVCKERVPRHR-eTKAYTLDFEKSAQGYHLHGKVHRVASQR-eDWSVKFD 
         :                                                                                                                          
 2gia(B) : SLPKFEIHDVRDDPAEGTMTRVAVDGKLLLISQYPQLGPRKVDPNDLSPQFDADRRISVRLRHVDLAYLVGVCKERVPRHRMETKAYTLDFEKSAQGYHLHGKVHRVASQRMEDWSVKFD 
           ________37_____44_______________61______________77______________________________________________________________________ 

           __________________________                                                                                               
 2gid(K) : NHFAVTLEHFLESALDESFGFRQHYA                                                                                               
         :                                                                                                                          
 2gia(B) : NHFAVTLEHFLESALDESFGFRQHYA                                                                                               
           __________________________                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.5
Translation
(A)
-0.2
Closure
(%)
33.0
Bending Residues
( green )
  37 - 38
  44 - 47
  61 - 62
  77 - 78
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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