Mode

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mode
  Conformer 1
(PDB) 		1b9n (A)
  Conformer 2
(PDB) 		1b9m (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 140 2.38   113 - 260
2 100 1.67   3 - 112

Sequence


           ______________________________________________________________________________________________________109_______________ 
 1b9n(A) : SHMQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHILVERATgAVLTRYGQRLIQLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISRFSLQ 
         :                                                                                                                          
 1b9m(B) : **HqAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINE-nQLSEHILVERa---VLTRYGQRLIQLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISRFSLQ 
           ______________________________________________________________________________________________________109_______________ 

           ________________________________________________________________________________________________________________________ 
 1b9n(A) : TSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQG 
         :                                                                                                                          
 1b9m(B) : TSARNQWFGTITA-------qHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVL-aLPDGQTLCATVPVNEATSLQQG 
           ________________________________________________________________________________________________________________________ 

           __________________                                                                                                       
 1b9n(A) : QNVTAYFNADSVIIATLC                                                                                                       
         :                                                                                                                          
 1b9m(B) : QNVTAYFNADSVIIATLC                                                                                                       
           __________________                                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		44.2
Translation
(A) 		-3.2
Closure
(%) 		91.2
Bending Residues
( green ) 		  109 - 125
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download