Mode

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mode
  Conformer 1
(PDB) 		1b9m (B)
  Conformer 2
(PDB) 		1o7l (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 130 1.33   123 - 260
2 110 3.08   3 - 122

Sequence


           _________________________________________________________________________________________________106____________________ 
 1b9m(B) : HqAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINE-nQLSEHILVERa---VLTRYGQRLIQLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISRFSLQTS 
         :                                                                                                                          
 1o7l(B) : MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGaVLTRYGQRLIQLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISRFSLQTS 
           _________________________________________________________________________________________________106____________________ 

           ________________________________________________________________________________________________________________________ 
 1b9m(B) : ARNQWFGTITA-------qHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVL-aLPDGQTLCATVPVNEATSLQQGQN 
         :                                                                                                                          
 1o7l(B) : ARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQN 
           ________________________________________________________________________________________________________________________ 

           ________________                                                                                                         
 1b9m(B) : VTAYFNADSVIIATLC                                                                                                         
         :                                                                                                                          
 1o7l(B) : VTAYFNADSVIIATLC                                                                                                         
           ________________                                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		32.4
Translation
(A) 		0.5
Closure
(%) 		25.0
Bending Residues
( green ) 		  106 - 127
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download