Monoclonal Antibody Against The Main Immunogenic Region Of The Human Muscle Acetylcholine Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Monoclonal Antibody Against The Main Immunogenic Region Of The Human Muscle Acetylcholine Receptor
  Conformer 1
(PDB)
1c5d (B)
  Conformer 2
(PDB)
1c5d (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 148 0.79   3 - 125   145 - 149   152 - 152   158 - 158   162 - 167   175 - 178   196 - 199   206 - 206   208 - 210
2 62 0.83   126 - 144   150 - 151   153 - 157   159 - 161   168 - 174   179 - 195   200 - 205   207 - 207   211 - 212

Sequence


           ________________________________________________________________________________________________________________________ 
 1c5d(B) : EVKLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQT 
         :                                                                                                                          
 1c5d(H) : EVKLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQT 
           ________________________________________________________________________________________________________________________ 

           __125________________144__149_____157______________174_178______________195_199___205__210_____                          
 1c5d(B) : TAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPSQTVTCNVAHPASSTKVDKKLERR                          
         :                                                                                                                          
 1c5d(H) : TAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPSQTVTCNVAHPASSTKVDKKLER*                          
           __125________________144__149_____157______________174_178______________195_199___205__210_____                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.1
Translation
(A)
-0.3
Closure
(%)
88.5
Bending Residues
( green )
  125 - 126
  144 - 145
  149 - 153
  157 - 168
  174 - 176
  178 - 179
  195 - 196
  199 - 200
  205 - 208
  210 - 211
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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