Mrna Capping Enzyme Alpha Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mrna Capping Enzyme Alpha Subunit
  Conformer 1
(PDB)
1p16 (A)
  Conformer 2
(PDB)
1p16 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 260 0.78   7 - 246   363 - 387
2 106 1.04   4 - 6   247 - 362

Sequence


           ____6___________________________________________________________________________________________________________________ 
 1p16(A) : VQLEEREIPVIPGNKLDEEETKELRLvAELLGRRNTGFPGSQPVSFERRHLEETLqKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLL 
         :                                                                                                                          
 1p16(B) : VQLEEREIPVIPGNKLDEEETKELRLvAELLGRRNTGFPGSQPVSFERRHLEETLqKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLL 
           ____6___________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________________244__ 
 1p16(A) : DGELVLENRNVSEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVkPFDNFKKHNPDIVNSPEFPFKVGFKTlTSYHADDVLSKdKLFHASDGLIYTCAETPYVFGTDQTLLKWKPAE 
         :                                                                                                                          
 1p16(B) : DGELVLENRNVSEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVkPFDNFKKHNPDIVNSPEFPFKVGFKTlTSYHADDVLSKdKLFHASDGLIYTCAETPYVFGTDQTLLKWKPAE 
           ___________________________________________________________________________________________________________________244__ 

           ________________________________________________________________________________________________________________362_____ 
 1p16(A) : ENTVDFQLEFVFNEVQDPDLDERDPTSTYLDYDAKPNLIKLRVWQGSNVHTDFAKLDLSDDDWERLKALEQPLQGRIAECRQSTTKKGYWElRFRNDKSNGNHISVVEKILVSIKDGVKE 
         :                                                                                                                          
 1p16(B) : ENTVDFQLEFVFNEVQ------------yLDYDAKPNLIKLRVWQGSNVHTDFAKLDLSDDDWERLKALEQPLQGRIAECRQSTTKKGYWElRFRNDKSNGNHISVVEKILVSIKDGVKE 
           ________________________________________________________________________________________________________________362_____ 

           _______________________                                                                                                  
 1p16(A) : KEVIEWCPKISRAWKKRENDRRQ                                                                                                  
         :                                                                                                                          
 1p16(B) : KEVIEWCPKISRAWKKRENDRR*                                                                                                  
           _______________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.1
Translation
(A)
1.5
Closure
(%)
96.0
Bending Residues
( green )
  6 - 10
  244 - 247
  362 - 365
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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