Multidrug Resistance Operon Repressor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Multidrug Resistance Operon Repressor
  Conformer 1
(PDB) 		1lnw (B)
  Conformer 2
(PDB) 		1lnw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 71 1.05   28 - 105
2 47 1.2   5 - 27   106 - 132

Sequence


           ____________________25____________________________________________________________________________105___________________ 
 1lnw(B) : *YPVNPDLpALaVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQcRDKALITRKIRELEGRNLVRREr------SFQLFLTDEGLAIHQHAEAIsRVHDELFAPLTP 
         :                                                                                                                          
 1lnw(A) : NYPVNPDLpALaVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQcRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQHAEAIsRVHDELFAPLTP 
           ____________________25____________________________________________________________________________105___________________ 

           ______________________                                                                                                   
 1lnw(B) : VEQATLVHLLDQCLAAQPLEDI                                                                                                   
         :                                                                                                                          
 1lnw(A) : VEQATLVHLLDQCLAAQ*****                                                                                                   
           ______________________                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.2
Translation
(A) 		0.0
Closure
(%) 		1.7
Bending Residues
( green ) 		  25 - 30
  105 - 106
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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