Myosin Regulatory Light Chain, Striated Adductor Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Myosin Regulatory Light Chain, Striated Adductor Muscle
  Conformer 1
(PDB)
1qvi (Y)
  Conformer 2
(PDB)
1s5g (Y)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 74 0.59   77 - 150
2 55 1.63   22 - 76

Sequence


           _______________________________________________________________76_______________________________________________________ 
 1qvi(Y) : LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKE 
         :                                                                                                                          
 1s5g(Y) : *PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKE 
           _______________________________________________________________76_______________________________________________________ 

           _______________________                                                                                                  
 1qvi(Y) : APVEGGKFDYVKFTAMIKGSG**                                                                                                  
         :                                                                                                                          
 1s5g(Y) : APVEGGKFDYVKFTAMIKGSGEE                                                                                                  
           _______________________                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.4
Translation
(A)
-0.9
Closure
(%)
57.7
Bending Residues
( green )
  76 - 83
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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