Myosin Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Myosin Heavy Chain
  Conformer 1
(PDB)
1kqm (A)
  Conformer 2
(PDB)
1dfk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 573 1.98   8 - 496   516 - 705
2 130 1.48   497 - 505   708 - 833

Sequence


           ________________________________________________________________________________________________________________________ 
 1kqm(A) : FSDPDFQYLAmKEQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP 
         :                                                                                                                          
 1dfk(A) : *SDPDFQYLAVD-----fDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kqm(A) : IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVgSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADI 
         :                                                                                                                          
 1dfk(A) : IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKV-------eDQIIQANPVLEAYG-----------rFGKFIRIHFGPTGKIAGADI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kqm(A) : ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKeQAESDGTAEAEKVAFLC 
         :                                                                                                                          
 1dfk(A) : ETYLLEKSRVTYQQSA--------------iPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFK--aESDGTAEAEKVAFLC 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________________493_________505_____ 
 1kqm(A) : GINAGDLLKALLKPKVKVmVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWE-- 
         :                                                                                                                          
 1dfk(A) : GINAGDLLKALLKPK----------mNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFI 
           ____________________________________________________________________________________________________493_________505_____ 

           ________________________________________________________________________________________________________________________ 
 1kqm(A) : dFGMDLQMCIDLIEKPMGILSILEEEC---kADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAf 
         :                                                                                                                          
 1dfk(A) : DFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKP---nQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKA------ 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________692______________________________________________________________________ 
 1kqm(A) : QTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLE------kGFPSRLIYSEFKQRYSILAPNAIdGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVL 
         :                                                                                                                          
 1dfk(A) : -tISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPgKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVL 
           _______________________________________________692______________________________________________________________________ 

           ____________________________________________________________________                                                     
 1kqm(A) : GNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKP                                                     
         :                                                                                                                          
 1dfk(A) : GNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKP                                                     
           ____________________________________________________________________                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
51.1
Translation
(A)
-0.3
Closure
(%)
36.7
Bending Residues
( green )
  493 - 498
  505 - 517
  692 - 709
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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