Myosin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Myosin
  Conformer 1
(PDB)
2mys (A)
  Conformer 2
(PDB)
1o1d (J)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 683 2.05   6 - 767
2 68 1.11   769 - 841

Sequence


           ________________________________________________________________________________________________________________________ 
 2mys(A) : DAEMAAFGEAAPYLRsEKERIEAQNpFDAsSVFVVHPKQSFVgTIQSeGGvTVtEGGETLTVKEDQVFSMNPPyDiEDMAMMTHLHEPAVLYNLeRYAAWMIYTYSGLFCVTVNPYwLPV 
         :                                                                                                                          
 1o1d(J) : DAEMAAFGEAAPYLRsEKERIEAQNpFDAsSVFVVHPKQSFVgTIQSeGGvTVtEGGETLTVKEDQVFSMNPPyDiEDMAMMTHLHEPAVLYNLeRYAAWMIYTYSGLFCVTVNPYwLPV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2mys(A) : YNPvVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTrVIQYFATIAASGE-----------gTLEDQIISANPLLEAFGNAtVRNDNSSRFGfIRIHFGATG 
         :                                                                                                                          
 1o1d(J) : YNPvVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTrVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAtVRNDNSSRFGfIRIHFGATG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2mys(A) : KLASADIETYLLEsRVTFQLPAERSYHIFYQIMSNpELIDMLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILGFSADEtAIYlTGAVMHYGNLKFqqREEQAEPDGTEVADa 
         :                                                                                                                          
 1o1d(J) : KLASADIETYLLEsRVTFQLPAERSYHIFYQIMSNpELIDMLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILGFSADEtAIYlTGAVMHYGNLKFqqREEQAEPDGTEVADa 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2mys(A) : AYLMGLNSAELLKALCYPRVGVGNEAVTgETVSEVHNSVGALAaVYEmFLWMVIRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNElQQFFNHHMFVLEQEEYeGIEWEF 
         :                                                                                                                          
 1o1d(J) : AYLMGLNSAELLKALCYPRVGVGNEAVTgETVSEVHNSVGALAaVYEmFLWMVIRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNElQQFFNHHMFVLEQEEYeGIEWEF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2mys(A) : IDFGMDLAACIELIEpMGIFSILEEECMFPKATDTSFnlYDEHLGKSNNFQKPKPA---aEAHFSLVHYAGTVDYNISGWLEndPLNETVIGLYQsSVtLALLFATY------------- 
         :                                                                                                                          
 1o1d(J) : IDFGMDLAACIELIEpMGIFSILEEECMFPKATDTSFnlYDEHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNISGWLEndPLNETVIGLYQsSVtLALLFATYGGEAEGGGGKKGG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________708_____________________________________________________ 
 2mys(A) : -------qTVSALFRENLNlMANLRSTHPHFVRCIIPNETtPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQRYRVLNASA------mDSKKASEKLLGGGDVDHTQYAFG 
         :                                                                                                                          
 1o1d(J) : KKKGSSFQTVSALFRENLNlMANLRSTHPHFVRCIIPNETtPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLLGGGDVDHTQYAFG 
           ________________________________________________________________708_____________________________________________________ 

           ___________________________________________________________________________                                              
 2mys(A) : HTvFFaGLLGLLEEMRDDlAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVhWPWMlFFipLLK                                              
         :                                                                                                                          
 1o1d(J) : HTvFFagLLGLLEEMRDDlAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVhWPWMlFFipLLK                                              
           ___________________________________________________________________________                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
67.1
Translation
(A)
-0.4
Closure
(%)
73.9
Bending Residues
( green )
  708 - 771
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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