Myosin Ie Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Myosin Ie Heavy Chain
  Conformer 1
(PDB)
1lkx (B)
  Conformer 2
(PDB)
1lkx (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 586 0.74   11 - 422   428 - 431   434 - 616   624 - 624   626 - 628   667 - 673   680 - 680
2 60 1.17   423 - 427   432 - 433   617 - 623   625 - 625   629 - 666   674 - 679   681 - 690

Sequence


           ________________________________________________________________________________________________________________________ 
 1lkx(B) : GVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPN 
         :                                                                                                                          
 1lkx(C) : GVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1lkx(B) : GERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKI 
         :                                                                                                                          
 1lkx(C) : GERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1lkx(B) : IVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQ----tTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSvISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTTEK 
         :                                                                                                                          
 1lkx(C) : IVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSvISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTTEK 
           ________________________________________________________________________________________________________________________ 

           _____________________________________418______427_______________________________________________________________________ 
 1lkx(B) : GPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSI 
         :                                                                                                                          
 1lkx(C) : GPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSI 
           _____________________________________418______427_______________________________________________________________________ 

           _______________________________________________________________________________________________________________612______ 
 1lkx(B) : GDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFP-----------eTAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVR 
         :                                                                                                                          
 1lkx(C) : GDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTRPEDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVR 
           _______________________________________________________________________________________________________________612______ 

           __623__________________________________660________________679__________________                                          
 1lkx(B) : VRRAGFAGRIEYTRFYNRYKMLCK---------aKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKR*****                                          
         :                                                                                                                          
 1lkx(C) : VRRAGFAGRIEYTRFYNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRELEMP                                          
           __623__________________________________660________________679__________________                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.5
Translation
(A)
-0.5
Closure
(%)
96.2
Bending Residues
( green )
  418 - 423
  427 - 438
  612 - 617
  623 - 629
  660 - 674
  679 - 681
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download