Myristoyl-Coa:protein N-Myristoyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Myristoyl-Coa:protein N-Myristoyltransferase
  Conformer 1
(PDB)
2nmt (A)
  Conformer 2
(PDB)
1iic (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 379 0.73   38 - 95   99 - 101   111 - 111   120 - 330   348 - 453
2 29 1.01   96 - 98   110 - 110   112 - 119   331 - 347

Sequence


           ____________________________________________________________95_98__________________119__________________________________ 
 2nmt(A) : AMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIP 
         :                                                                                                                          
 1iic(A) : AMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIP 
           ____________________________________________________________95_98__________________119__________________________________ 

           ________________________________________________________________________________________________________________________ 
 2nmt(A) : VTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVF 
         :                                                                                                                          
 1iic(A) : VTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVF 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________330______________347______________________________________________ 
 2nmt(A) : ELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANM 
         :                                                                                                                          
 1iic(A) : ELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANM 
           ______________________________________________________330______________347______________________________________________ 

           ______________________________________________________________                                                           
 2nmt(A) : DVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML                                                           
         :                                                                                                                          
 1iic(A) : DVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML                                                           
           ______________________________________________________________                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.6
Translation
(A)
0.2
Closure
(%)
98.3
Bending Residues
( green )
  95 - 96
  98 - 99
  101 - 112
  119 - 120
  330 - 331
  347 - 348
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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