Nad-Dependent Deacetylase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad-Dependent Deacetylase 2
  Conformer 1
(PDB) 		1s7g (E)
  Conformer 2
(PDB) 		1s7g (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 165 1.05   3 - 37   71 - 121   168 - 248
2 79 1.3   38 - 70   122 - 167

Sequence


           ________________________________34__________________________________70________________________________________________12 
 1s7g(E) : MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKD--fAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGS 
         :                                                                                                                          
 1s7g(A) : MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGS 
           ________________________________34__________________________________70________________________________________________12 

           1___________________________________________167_________________________________________________________________________ 
 1s7g(E) : MDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLP 
         :                                                                                                                          
 1s7g(A) : MDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLP 
           1___________________________________________167_________________________________________________________________________ 

           ____________                                                                                                             
 1s7g(E) : KIVEEVKRLR**                                                                                                             
         :                                                                                                                          
 1s7g(A) : KIVEEVKRLRSE                                                                                                             
           ____________                                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		25.2
Translation
(A) 		-1.1
Closure
(%) 		55.2
Bending Residues
( green ) 		  34 - 43
  70 - 71
  121 - 122
  167 - 169
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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