Nadp-Dependent Malic Enzyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nadp-Dependent Malic Enzyme
  Conformer 1
(PDB)
2aw5 (C)
  Conformer 2
(PDB)
2aw5 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 269 0.44   239 - 239   254 - 256   260 - 260   272 - 451   457 - 545
2 260 0.49   17 - 238   240 - 253   257 - 259   261 - 271   452 - 456   546 - 550

Sequence


           ________________________________________________________________________________________________________________________ 
 2aw5(C) : GYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDRGHIA 
         :                                                                                                                          
 2aw5(B) : GYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDRGHIA 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________238____________253_ 
 2aw5(C) : SVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANVNAFR 
         :                                                                                                                          
 2aw5(B) : SVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANVNAFR 
           _____________________________________________________________________________________________________238____________253_ 

           _____________270________________________________________________________________________________________________________ 
 2aw5(C) : LLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKEGLPKEKAIKKIWLVDSKGLIVKGqEKEKFAHEHEEMKNLEAIVQEIKPTALIGV 
         :                                                                                                                          
 2aw5(B) : LLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKEGLPKEKAIKKIWLVDSKGLIVKGqEKEKFAHEHEEMKNLEAIVQEIKPTALIGV 
           _____________270________________________________________________________________________________________________________ 

           ___________________________________________________________________449__________________________________________________ 
 2aw5(C) : AAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQITDNIFLTTAEVIAQQVSDKHLEEGRL 
         :                                                                                                                          
 2aw5(B) : AAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQITDNIFLTTAEVIAQQVSDKHLEEGRL 
           ___________________________________________________________________449__________________________________________________ 

           _______________________________________541______________                                                                 
 2aw5(C) : YPPLNTIRDVSLKIAEKIVKDAYQEKTATVYPEPQNKEAFVRSQMYSTDYDQI***                                                                 
         :                                                                                                                          
 2aw5(B) : YPPLNTIRDVSLKIAEKIVKDAYQEKTATVYPEPQNKEAFVRSQMYSTDYDQILPD                                                                 
           _______________________________________541______________                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.4
Translation
(A)
0.2
Closure
(%)
99.2
Bending Residues
( green )
  238 - 240
  253 - 261
  270 - 274
  449 - 457
  541 - 546
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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