DynDom - Protein Domain Motions

Nad(p) Transhydrogenase Subunit Alpha Part 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Nad(p) Transhydrogenase Subunit Alpha Part 1
Conformer 1 (PDB)	2oo5 (B)
Conformer 2 (PDB)	1u28 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	199	0.62	135 - 330 336 - 338
2	175	0.67	3 - 134 331 - 335 339 - 376

Sequence

`________________________________________________________________________________________________________________________` `2oo5(B) : MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAY` `:` `1u28(A) : MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAY` `________________________________________________________________________________________________________________________` `___________134__________________________________________________________________________________________________________` `2oo5(B) : AMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMG` `:` `1u28(A) : AMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMG` `___________134__________________________________________________________________________________________________________` `_______________________________________________________________________________________330__335_________________________` `2oo5(B) : EEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLED` `:` `1u28(A) : EEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLED` `_______________________________________________________________________________________330__335_________________________` `____________________` `2oo5(B) : ETVSGTCVTRDGAIVHPALT` `:` `1u28(A) : ETVSGTCVTRDGAIVHPA**` `____________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	9.0
Translation (A)	0.4
Closure (%)	68.2
Bending Residues ( green )	134 - 135 330 - 331 335 - 336 338 - 339
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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