Nad-Specific Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad-Specific Glutamate Dehydrogenase
  Conformer 1
(PDB) 		1aup  
  Conformer 2
(PDB) 		1hrd (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 216 0.82   192 - 378   382 - 432
2 207 0.66   3 - 191   379 - 381   433 - 447

Sequence


           ________________________________________________________________________________________________________________________ 
 1aup    : SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLP 
         :                                                                                                                          
 1hrd(C) : SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLP 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________184________________________________________________________ 
 1aup    : MGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVL------------rPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN 
         :                                                                                                                          
 1hrd(C) : MGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN 
           _____________________________________________________________184________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1aup    : VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQ 
         :                                                                                                                          
 1hrd(C) : VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQ 
           ________________________________________________________________________________________________________________________ 

           ____________375_____________________________________________________431__________________                                
 1aup    : QPNMVVAPSKAVNAGGVLVVGFE----------tAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW                                
         :                                                                                                                          
 1hrd(C) : QPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW                                
           ____________375_____________________________________________________431__________________                                

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		24.7
Translation
(A) 		-0.8
Closure
(%) 		96.9
Bending Residues
( green ) 		  184 - 208
  375 - 382
  431 - 436
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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