Nad-Specific Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad-Specific Glutamate Dehydrogenase
  Conformer 1
(PDB) 		1aup  
  Conformer 2
(PDB) 		1bgv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 231 0.6   3 - 190   365 - 366   379 - 381   410 - 447
2 192 0.7   191 - 364   367 - 378   382 - 409

Sequence


           ________________________________________________________________________________________________________________________ 
 1aup    : SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLP 
         :                                                                                                                          
 1bgv(A) : SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLP 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________183_________________________________________________________ 
 1aup    : MGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVL------------rPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN 
         :                                                                                                                          
 1bgv(A) : MGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN 
           ____________________________________________________________183_________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1aup    : VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQ 
         :                                                                                                                          
 1bgv(A) : VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQ 
           ________________________________________________________________________________________________________________________ 

           _364___________378____________________________409________________________________________                                
 1aup    : QPNMVVAPSKAVNAGGVLVVGFE----------tAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW                                
         :                                                                                                                          
 1bgv(A) : QPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW                                
           _364___________378____________________________409________________________________________                                

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.3
Translation
(A) 		-0.4
Closure
(%) 		73.7
Bending Residues
( green ) 		  183 - 191
  364 - 367
  378 - 379
  381 - 401
  409 - 410
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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