Nagk Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nagk Protein
  Conformer 1
(PDB) 		2ch5 (A)
  Conformer 2
(PDB) 		2ch6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 218 0.72   16 - 16   73 - 75   77 - 77   106 - 106   108 - 310   330 - 341
2 113 1.13   5 - 15   17 - 72   76 - 76   81 - 105   107 - 107   311 - 329

Sequence


           ___________9_____________________________________________________________72_75___________________________105____________ 
 2ch5(A) : PQFMAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATP 
         :                                                                                                                          
 2ch6(A) : ****AAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATP 
           ___________9_____________________________________________________________72_75___________________________105____________ 

           ________________________________________________________________________________________________________________________ 
 2ch5(A) : DGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRK 
         :                                                                                                                          
 2ch6(A) : DGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRK 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________310________________329_______________              
 2ch5(A) : AGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGR---aQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS              
         :                                                                                                                          
 2ch6(A) : AGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS              
           ______________________________________________________________________310________________329_______________              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.2
Translation
(A) 		-0.4
Closure
(%) 		58.3
Bending Residues
( green ) 		  9 - 17
  72 - 73
  75 - 84
  105 - 108
  310 - 311
  329 - 330
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download