Neopullulanase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Neopullulanase 2
  Conformer 1
(PDB)
2d2o (A)
  Conformer 2
(PDB)
1wzm (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 292 0.87   133 - 193   195 - 195   214 - 217   224 - 238   310 - 311   319 - 324   351 - 353   371 - 373   377 - 401   412 - 583
2 289 0.7   3 - 132   194 - 194   196 - 213   218 - 223   239 - 309   312 - 318   325 - 350   354 - 370   374 - 376   402 - 411

Sequence


           ________________________________________________________________________________________________________________________ 
 2d2o(A) : MLLEAIFHEAKGSYAYPISETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGEAVYFGETGFSAERSKAGVFQYAYIHRSE 
         :                                                                                                                          
 1wzm(B) : MLLEAIFHEAKGSYAYPISETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGEAVYFGETGFSAERSKAGVFQYAYIHRSE 
           ________________________________________________________________________________________________________________________ 

           _________132__________________________________________________________193_________________213_217___223____________238__ 
 2d2o(A) : VFTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 
         :                                                                                                                          
 1wzm(B) : VFTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 
           _________132__________________________________________________________193_________________213_217___223____________238__ 

           __________________________________________________________________309______318___324_______________________350__________ 
 2d2o(A) : VFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQGIDGWRLNVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDAS 
         :                                                                                                                          
 1wzm(B) : VFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDAS 
           __________________________________________________________________309______318___324_______________________350__________ 

           _______370____________________________401_______411_____________________________________________________________________ 
 2d2o(A) : GWLMGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATDPDCRRPMIWEEKEQN 
         :                                                                                                                          
 1wzm(B) : GWLMGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATDPDCKRPMIWEEKEQN 
           _______370____________________________401_______411_____________________________________________________________________ 

           _________________________________________________________________________________________________________                
 2d2o(A) : RGLFEFYKELIRLRHRLASLTRGNVRSWHADKQANLYAFVRTVQDQHVGVVLNNRGEKQTVLLQVPESGGKTWLDCLTGEEVHGKQGQLKLTLRPYQGMILWNGR                
         :                                                                                                                          
 1wzm(B) : RGLFEFYKELIRLRHRLASLTRGNVRSWHADKQANLYAFVRTVQDQHVGVVLNNRGEKQTVLLQVPESGGKTWLDCLTGEEVHGKQGQLKLTLRPYQGMILWNGR                
           _________________________________________________________________________________________________________                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.7
Translation
(A)
-0.1
Closure
(%)
100.0
Bending Residues
( green )
  132 - 133
  193 - 196
  213 - 214
  217 - 218
  223 - 224
  238 - 241
  309 - 312
  318 - 319
  324 - 326
  350 - 354
  370 - 371
  373 - 377
  401 - 402
  411 - 412
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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