N-Ethylmaleimide Sensitive Fusion Protein (Nsf)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name N-Ethylmaleimide Sensitive Fusion Protein (Nsf)
  Conformer 1
(PDB) 		1qdn (C)
  Conformer 2
(PDB) 		1qcs (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 98 0.81   87 - 199
2 80 0.6   7 - 86

Sequence


           ____________________________________________________________________________________85__________________________________ 
 1qdn(C) : TMAGRSMQAARCPTDELSLSNCAVVSEKDYQSGQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSLPQRKWAGLSIGQEIEVALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAA 
         :                                                                                                                          
 1qcs(A) : *NaGRS-qAARCPTDELSLSNCAVVSEKDYQSGQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSLPQRKWAGLSIGQEIEVALYSFDKAKQCIGT-tIEIDFLQKKNIDSNPYDTDK-aA 
           ____________________________________________________________________________________85__________________________________ 

           ___________________________________________________________________________                                              
 1qdn(C) : EFIQQFNNQAFSVGQQLVFSFNDKLFGLLVKDIEAMDP-----qKIEVGLVVGNSQVAFEKAENSSLNLIGKAKT                                              
         :                                                                                                                          
 1qcs(A) : EFIQQFNNQAFSVGQQLVFSFNDKLFGLLVKDIEA-dPSILKrQKIEVGLVVGNSQVAFEKAENSSLNLIGKAKT                                              
           ___________________________________________________________________________                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.1
Translation
(A) 		-0.1
Closure
(%) 		10.2
Bending Residues
( green ) 		  85 - 89
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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