Transcription Factor Nf-Kb P65

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcription Factor Nf-Kb P65
  Conformer 1
(PDB)
1vkx (A)
  Conformer 2
(PDB)
1lei (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 164 0.81   21 - 30   32 - 185
2 105 0.81   31 - 31   186 - 289

Sequence


           __________30____________________________________________________________________________________________________________ 
 1vkx(A) : AYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNN 
         :                                                                                                                          
 1lei(A) : AYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNN 
           __________30____________________________________________________________________________________________________________ 

           ____________________________________________185_________________________________________________________________________ 
 1vkx(A) : NPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYA 
         :                                                                                                                          
 1lei(A) : NPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYA 
           ____________________________________________185_________________________________________________________________________ 

           _________________________________                                                                                        
 1vkx(A) : DPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPD                                                                                        
         :                                                                                                                          
 1lei(A) : DPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPD                                                                                        
           _________________________________                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.9
Translation
(A)
-0.5
Closure
(%)
88.6
Bending Residues
( green )
  30 - 32
  185 - 186
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download