Nickel Responsive Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nickel Responsive Regulator
  Conformer 1
(PDB)
1q5v (C)
  Conformer 2
(PDB)
1q5v (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 48 1.62   44 - 102   124 - 130
2 41 0.66   3 - 43

Sequence


           _______________________________________41___________________________________________________________________________     
 1q5v(C) : MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYEh-DLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKE     
         :                                                                                                                          
 1q5v(A) : MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQ-hGTQGFAVLSYVYEhHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKE     
           _______________________________________41___________________________________________________________________________     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.2
Translation
(A)
-2.4
Closure
(%)
100.0
Bending Residues
( green )
  41 - 49
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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