Nicotinate-Nucleotide Adenylyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nicotinate-Nucleotide Adenylyltransferase
  Conformer 1
(PDB) 		1kam (B)
  Conformer 2
(PDB) 		1kaq (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 125 3.24   8 - 102   146 - 181
2 36 3.64   103 - 145

Sequence


           ___________________________________________________________________________________________________102__________________ 
 1kam(B) : SKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPH------tDSFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYK-- 
         :                                                                                                                          
 1kaq(A) : *KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLD 
           ___________________________________________________________________________________________________102__________________ 

           ______________________145___________________________________________                                                     
 1kam(B) : -----iQFIGVKRPGFHVETPYPLLFADVPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLYE                                                     
         :                                                                                                                          
 1kaq(A) : ELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLY*                                                     
           ______________________145___________________________________________                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		36.3
Translation
(A) 		0.7
Closure
(%) 		95.9
Bending Residues
( green ) 		  102 - 103
  145 - 146
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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