Nif3-Related Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nif3-Related Protein
  Conformer 1
(PDB) 		2gx8 (C)
  Conformer 2
(PDB) 		2gx8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 262 0.33   6 - 135   240 - 371
2 93 0.51   136 - 239

Sequence


           ________________________________________________________________________________________________________________________ 
 2gx8(C) : SKIPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEAL 
         :                                                                                                                          
 2gx8(A) : **IPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEAL 
           ________________________________________________________________________________________________________________________ 

           _____129___________________________________________________________________________________________________239__________ 
 2gx8(C) : GLQNTEVLAPTYAEEMKKVVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQEGgQLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNKGETLGLGKIG 
         :                                                                                                                          
 2gx8(A) : GLQNTEVLAPTYAEEMKKVVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQ---qLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNKGETLGLGKIG 
           _____129___________________________________________________________________________________________________239__________ 

           ________________________________________________________________________________________________________________________ 
 2gx8(C) : YLQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMMLGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVHIHASQLHTDP 
         :                                                                                                                          
 2gx8(A) : YLQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMMLGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVHIHASQLHTDP 
           ________________________________________________________________________________________________________________________ 

           ____                                                                                                                     
 2gx8(C) : FIFV                                                                                                                     
         :                                                                                                                          
 2gx8(A) : FIFV                                                                                                                     
           ____                                                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.7
Translation
(A) 		0.2
Closure
(%) 		69.1
Bending Residues
( green ) 		  129 - 136
  239 - 240
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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