Nif3-Related Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nif3-Related Protein
  Conformer 1
(PDB) 		2gx8 (A)
  Conformer 2
(PDB) 		2gx8 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 265 0.32   6 - 136   238 - 371
2 90 0.65   137 - 237

Sequence


           ________________________________________________________________________________________________________________________ 
 2gx8(A) : **IPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEAL 
         :                                                                                                                          
 2gx8(B) : SKIPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEAL 
           ________________________________________________________________________________________________________________________ 

           ____________136_______________________________________________________________________________________237_______________ 
 2gx8(A) : GLQNTEVLAPTYAEEMKKVVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQqLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNKGETLGLGKIGYLQ 
         :                                                                                                                          
 2gx8(B) : GLQNTEVLAPTYAEEMKKVVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQqLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNKGETLGLGKIGYLQ 
           ____________136_______________________________________________________________________________________237_______________ 

           ________________________________________________________________________________________________________________________ 
 2gx8(A) : EEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMMLGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVHIHASQLHTDPFIF 
         :                                                                                                                          
 2gx8(B) : EEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMMLGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVHIHASQLHTDPFIF 
           ________________________________________________________________________________________________________________________ 

           _                                                                                                                        
 2gx8(A) : V                                                                                                                        
         :                                                                                                                          
 2gx8(B) : V                                                                                                                        
           _                                                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.3
Translation
(A) 		0.4
Closure
(%) 		82.5
Bending Residues
( green ) 		  136 - 137
  237 - 243
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

Download and extract PyMOL PML script file Download