Non-Toxic Crystal Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Non-Toxic Crystal Protein
  Conformer 1
(PDB)
2d42 (B)
  Conformer 2
(PDB)
2d42 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 127 0.9   4 - 45   86 - 101   122 - 129   168 - 228
2 118 1.0   46 - 85   102 - 121   130 - 167   229 - 248

Sequence


           __________________________________________45______________________________________85_____________101_________________121 
 2d42(B) : AIINLLRELEIYGMQYANSHQYTYGSSYSDDTNPIRIAGLDARIPDPIVTDPVNHIVLDRRIITNTTSNSLEGVFSFSNAYTSRTSSQTRDGVTAGTNITGKYFANLFFEQVGLSGRIAF 
         :                                                                                                                          
 2d42(A) : AIINLLRELEIYGMQYANSHQYTYGSSYSDDTNPIRIAGLDARIPDPIVTDPVNHIVLDRRIITNTTSNSLEGVFSFSNAYTSRTSSQTRDGVTAGTNITGKYFANLFFEQVGLSGRIAF 
           __________________________________________45______________________________________85_____________101_________________121 

           _____129___________________________________167__________________________________________________________228_____________ 
 2d42(B) : EGAVTNENKYTLDATQDFRDSQTIRVPPFHRATGVYTLEQGAFEKMTVLECVVSGNGIIRYYRTLPDNSYTEIVQRVNIIDVLQANGTPGFTISKEQNRAYFTGEGTISGQIGLQTFIDV 
         :                                                                                                                          
 2d42(A) : EGAVTNENKYTLDATQDFRDSQTIRVPPFHRATGVYTLEQGAFEKMTVLECVVSGNGIIRYYRTLPDNSYTEIVQRVNIIDVLQANGTPGFTISKEQNRAYFTGEGTISGQIGLQTFIDV 
           _____129___________________________________167__________________________________________________________228_____________ 

           _________                                                                                                                
 2d42(B) : VIEPLPGHA                                                                                                                
         :                                                                                                                          
 2d42(A) : VIEPLPGHA                                                                                                                
           _________                                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.6
Translation
(A)
0.4
Closure
(%)
97.6
Bending Residues
( green )
  45 - 46
  85 - 87
  101 - 102
  121 - 122
  129 - 130
  167 - 168
  228 - 229
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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